Research contributions and academic publications
See also Academia — research focus, teaching, and student supervision.
h-index
13
i10-index
14
Publications
30+
Citations
2778+
PhD downloads
1547+
Dmitry V. Bagaev • Eindhoven University of Technology
2023
Bayesian inference realizes optimal information processing through a full commitment to reasoning by probability theory. The Bayesian framework is a crucial technology at the core of modern AI with applications such as speech and image recognition and generation, biomedical analysis, robot navigation, and more. This dissertation focuses on the realization of efficient Bayesian inference in large-scale probabilistic models, targeting real-time signal processing and control applications under real-world conditions. We present a practical architecture based on reactive message passing-based inference in a factor graph representation of the probabilistic model under study.
M Goncharov, D Bagaev, D Shcherbinin, I Zvyagin, D Bolotin, PG Thomas, ...
Nature methods 19 (9), 1017-1019 • 2022
VDJtools: unifying post-analysis of T cell receptor repertoires · PLoS computational biology 11 (11), e1004503 · 2015
712+VDJdb: a curated database of T-cell receptor sequences with known antigen specificity · Nucleic acids research 46 (D1), D419-D427 · 2018
692+VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium · Nucleic acids research 48 (D1), D1057-D1062 · 2020
478+SARS-CoV-2 epitopes are recognized by a public and diverse repertoire of human T cell receptors · Immunity 53 (6), 1245-1257. e5 · 2020
297+MAGERI: Computational pipeline for molecular-barcoded targeted resequencing · PLoS computational biology 13 (5), e1005480 · 2017
65+Exploring the pre-immune landscape of antigen-specific T cells · Genome medicine 10 (1), 1-14 · 2018
52+VDJviz: a versatile browser for immunogenomics data · BMC genomics 17 (1), 453 · 2016
50+Variational message passing and local constraint manipulation in factor graphs · Entropy 23 (7), 807 · 2021
41+RxInfer: A Julia package for reactive real-time Bayesian inference · Journal of Open Source Software 8 (84), 5161 · 2023
33+Reactive message passing for scalable Bayesian inference · Scientific Programming 2023 (1), 6601690 · 2023
16+Improving parallel efficiency of a complex hydrogeological problem simulation in GeRa · Russian Supercomputing Days, 265-277 · 2019
16+Dynamic optimization of linear solver parameters in mathematical modelling of unsteady processes · Russian supercomputing days, 54-66 · 2017
10+Multi-agent trajectory planning with NUV priors · 2024 American Control Conference (ACC), 2766-2771 · 2024
6+ReactiveMP.jl: A Julia package for reactive variational Bayesian inference · Software Impacts 12, 100299 · 2022
6+Message passing-based inference in the Gamma mixture model · 2021 IEEE 31st International Workshop on Machine Learning for Signal Processing · 2021
6+Expected free energy-based planning as variational inference · arXiv preprint · 2025
4+Gaussian Variational Inference with Non-Gaussian Factors for State Estimation: A UWB Localization Case Study · IEEE Robotics and Automation Letters · 2026
1+ExponentialFamilyManifolds.jl: Representing exponential families as Riemannian manifolds · Proceedings of the JuliaCon Conferences 7 (70) · 2025
1+GraphPPL.jl: A Probabilistic Programming Language for Graphical Models · Entropy 26 (11) · 2024
1+Riemannian black box variational inference · NeurIPS 2024 Workshop on Bayesian Decision-making and Uncertainty · 2024
1+Message passing-based inference in switching autoregressive models · 2022 30th European Signal Processing Conference (EUSIPCO) · 2022
1+Composing Non-Conjugate Factor Graphs with Closed-Form Variational Inference · arXiv preprint · 2026
0+