Main Contributions
Primary projects and research outcomes
RxInfer.jl
Reactive Message-Passing Bayesian Inference Framework
A comprehensive Julia package for automatic Bayesian inference on factor graphs with reactive message passing. Consists of several open-source packages and has its own organization on GitHub. This project is a core component of my PhD dissertation.
- Main website: https://rxinfer.com/
- Documentation: https://docs.rxinfer.com/stable/
- Examples: https://examples.rxinfer.com/
- Core repository: https://github.com/reactivebayes/RxInfer.jl
- ReactiveMP.jl: https://github.com/reactivebayes/ReactiveMP.jl
- Rocket.jl: https://github.com/reactivebayes/Rocket.jl
- GraphPPL.jl: https://github.com/reactivebayes/GraphPPL.jl
- PhD dissertation: https://research.tue.nl/en/publications/reactive-probabilistic-programming-for-scalable-bayesian-inferenc
Rocket.jl
Reactive Programming Implementation
An efficient reactive programming implementation in Julia language. The most starred library for reactive programming in Julia, providing high-performance reactive streams and operators.
- Repository: https://github.com/reactivebayes/Rocket.jl
- Most starred reactive programming library in Julia ecosystem
- High-performance reactive streams and operators
- Comprehensive documentation and examples
A web application for browsing and querying database of T-cell receptor (TCR) sequences with known antigen specificities. Provides an intuitive interface for database navigation and can query immune repertoire sequencing samples against the database.
- Web application: https://vdjdb.cdr3.net/
- Publication in Nature: https://www.nature.com/articles/s41592-022-01578-0
- Intuitive interface for TCR database navigation
- Query immune repertoire sequencing samples
- Generate sample-level summary of antigen specificities
A versatile immune repertoire web-based graphical user interface application that allows browsing and analyzing immune repertoire sequencing (RepSeq) data with comprehensive visualization capabilities.
- Web application: https://vdjviz.cdr3.net/
- Comprehensive immune repertoire data analysis
- Advanced visualization capabilities
- User-friendly graphical interface
Open Source Contributions
Community contributions and ecosystem participation
Julia Programming Language
Core Language & Ecosystem Contributions
Active contributions to the Julia programming language core and its ecosystem, including bug fixes, feature implementations, and community support.
- Core repository: https://github.com/JuliaLang/julia
- Pull requests: https://github.com/JuliaLang/julia/pulls?q=is%3Apr+author%3Abvdmitri+is%3Aclosed
- Issue contributions: https://github.com/JuliaLang/julia/issues?q=is%3Aissue+author%3Abvdmitri+
- Bug fixes and feature implementations
- Community support and documentation
Contributions to a comprehensive analysis framework for T-cell and B-cell repertoire sequencing data, supporting advanced immunological research.
- Repository: https://github.com/mikessh/vdjtools
- Comprehensive analysis framework for immune repertoires
- Support for T-cell and B-cell sequencing data
- Advanced immunological research tools
Contributions to the Google Angular ecosystem, including issue reports, feature requests, and community engagement.
- Repository: https://github.com/angular/angular
- Issue contributions: https://github.com/angular/angular/issues?q=author%3Abvdmitri+
- Feature requests and bug reports
- Community engagement and support
Contributions to the Neovim ecosystem, including issue reports, feature suggestions, and community support for the modern Vim editor.
- Repository: https://github.com/neovim/neovim
- Issue contributions: https://github.com/neovim/neovim/issues?q=is%3Aissue+author%3Abvdmitri+is%3Aclosed
- Feature suggestions and bug reports
- Community support and documentation
Contributions to INMOST, a high-performance numerical library for large-scale scientific computing and reservoir simulation.
- Repository: https://github.com/INMOST-DEV/INMOST
- Commit history: https://github.com/INMOST-DEV/INMOST/commits/master/?author=bvdmitri
- High-performance numerical computing
- Large-scale scientific simulations
- Reservoir simulation capabilities